Super Jet pipe swap??

I have a 95 sn with a bpipe on it today I picked up a 2000 rn bone stock I will likely want to put the stock 2000 pipe on the 95 and the bpipe on the 2000 from reading here I get the idea that isn't a straight swap but not sure what the hang up is could somebody straighten me out on this
 
I have a 95 sn with a bpipe on it today I picked up a 2000 rn bone stock I will likely want to put the stock 2000 pipe on the 95 and the bpipe on the 2000 from reading here I get the idea that isn't a straight swap but not sure what the hang up is could somebody straighten me out on this

I could be wrong, but this should be a direct swap. Both should have 701 61X cylinders.

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