How good are you with wiring diagrams? You know it helps to take pics while you're taking something apart for the first time to help you remember where everything goes when assembling. Also, put the plugs in or cover the holes.....next thing you know you'll be asking why your compression is low.
The start/stop switch wires are backwards in the cover. What is that little guy hanging out on the gas tank? In the last pic you can just see his wires.......did you replace something, troubleshoot something, or just go in there disconnecting?