Matt, what you just said makes no sense. What are you talking about? Power stroke referenced to compression? Look at how Supertune figured out the compression, its all mechanical and if the particular compression guage reads what it reads great, but its still mechanical compression. Guages only indicate the sealing condition inside the cylinder.
Here's what I meant:
Compression is calculated as (piston area * stroke after exh closed) / (dome volume)
*This is simplified, as you know. Piston dome, below/above deck height comes into play, but this should illustrate what I mean)
If the exhaust ports are lower on the 650, then they close sooner (than a 61x).
All other things being equal (bore, stroke), that 6M6 cylinder will have more volume to compress than the 61X cylinder.
Obviously, on stock cylinders (both 6M6 and 61X), the compressible volume of the 6M6 is smaller due to smaller bore.
However, as stated above: I saw this happen on a 6M6 bored up to 82mm.
Sorry for the confusion...I hope this makes sense now